Software/Apps

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pySolo

A complete suite for sleep analysis in Drosophila

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BIITE (Bayesian Immunogenicity Inference Tool for ELISpot)

A Metropolis-Hastings implementation to infer which peptide:HLA-II combinations are immunogenic, from ELISpot data

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MetaboSignal

a network-based approach to overlay and explore metabolic and signaling KEGG pathways

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MARV

A tool for genome-wide multi-phenotype analysis of rare variants

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On Call: Antibiotics

An educational game where you diagnose patients and choose the right antibiotic treatments

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MWASTools

An integrated pipeline to perform metabolome-wide association studies

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Fluidity

An open-source computational fluid dynamics code with adaptive unstructured mesh capabilities

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Plastic Adrift

Browser-based model to estimate the position of ocean surface plastic over time

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ESO-XEL

Electricity Systems Optimisation with capacity eXpansion and Endogenous technology Learning

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TFBSTools

Extensive suite of tools for transcription factor binding site analysis

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Nektar++

Finite Element solver - also allows construction of new solvers

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Framework for MRI interrogation

Framework that simplifies the process of MRI interrogation

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Cognitron

Free online brain training games, refined with AI

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SobolGSA

Global sensitivity analysis and metamodelling software

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AniDom

Inferring Dominance Hierarchies and Estimating Uncertainty in Animal Social Structures

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Velocity

Integrated DevOps framework for designing and prototyping data-intensive applications for event processing

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Automated Assessment for Non-Alcoholic Fatty Liver Disease

Machine-learning based software, validated against experts' annotations

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FRECOL

MATLAB/Simulink educational tool aimed at power and control engineering students

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OSCILOS

Matlab/Simulink simulation tool for combustion instability

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MIRTK

Medical Image Registration ToolKit - for processing and analysing imaging data

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MetAssimulo

Metabolomic analysis software for the study of small molecules involved in metabolic reactions.

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MatImms

Mobile app which provides information and generates a schedule for vaccinations during pregnancy

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MRIdb: Medical imaging database

MRIdb is a data management system for MRI, combining the DCM4CHEE DICOM server with a packaged into a virtual machine.

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IC-FERST

Next generation reservoir simulator based on Control-Volume Finite Element methods and dynamic unstructured mesh optimisation.

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┬ÁMatIC

Open-source software to simulate solidification process and predict microstructure of alloys

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Brain Atlas

Probabilistic brain atlas for automatically labelling new scans and detecting anatomical abnormalities in patients

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╬ĚPEC

Simulating the fundamental thermodynamic limiting efficiency of photo-electrochemical (PEC) water splitting systems.

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SPIERS and VAXML

Software package for the reconstruction and analysis of tomographic (serial image) datasets

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Sustainability, Transformation & Resilience (STaR) Solution

Spreadsheet-based algorithm for strategic positioning of services

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Treespace

Statistical Exploration of Landscapes of Phylogenetic Trees

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UK Biobank Cardiac

Toolbox used for processing and analysing cardiovascular magnetic resonance (CMR) images from the UK Biobank Imaging Study

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VisUAL

VisUAL is a highly visual ARM emulator

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EzMol

Web server in software form for the rapid visualization and image production of protein molecules.

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